Improved footer

src/beamerthemeph.sty

@@ -143,21 +143,39 @@
   %  \rule{0pt}{2pt}
   %\end{beamercolorbox}
 
-  \begin{columns}[b,onlytextwidth]
+  \begin{columns}[c,onlytextwidth]
 	\column{.35\textwidth}
-	   \begin{beamercolorbox}[leftskip=-0.5cm,wd=\columnwidth]{logo}
+	   %\begin{beamercolorbox}[leftskip=-0.5cm,wd=\columnwidth, ht=3cm]{logo}
-    \vskip3.25ex
+	   \begin{beamercolorbox}[leftskip=-0.5cm,\columnwidth, ht=4cm]{logo}
     \includegraphics[width=0.9\textwidth,right]{logo_feinstein.pdf}
-    \vskip1.6ex
+    %\vskip1.6ex
 	   \end{beamercolorbox}
 	\column{.65\textwidth}
-	  \begin{beamercolorbox}[leftskip=1cm,wd=\columnwidth]{headline}
+	  \begin{beamercolorbox}[leftskip=1cm,wd=\columnwidth, ht=4cm]{headline}
     %\hfill \raisebox{-0.4cm}{\insertfooter}
-    \vskip1.5ex
+    %\vskip1.5ex
     %\insertfooter
-    \includegraphics[width=0.65\textwidth,left]{twittergithub.pdf}
+    %\includegraphics[width=0.65\textwidth,left]{twittergithub.pdf}
-    \vskip1.5ex
+    %\vskip1.5ex
 	  %\begin{beamercolorbox}[wd=\columnwidth]{logo}
+
+    %\begin{tabular}{rllrll}
+    %  \textbf{Philipp Homan, MD, PhD} & & & & & \\
+    %  phoman1@northwell.edu & & 
+    %  \includegraphics[width=0.5in]{twitter.pdf} & @philipphoman &  
+    %  \includegraphics[width=0.5in]{github.pdf} & github.com/philipphoman \\
+    % \end{tabular}
+    % \vspace{-0.2ex}
+
+
+    \begin{tabular}{rllrll}
+      \textbf{Philipp Homan, MD, PhD} & & & & & \\
+      phoman1@northwell.edu & & 
+      \includegraphics[width=0.5in]{twitter.pdf} & @philipphoman &  
+      \includegraphics[width=0.5in]{github.pdf} & github.com/philipphoman \\
+     \end{tabular}
+     \vspace{-0.2ex}
+
 	  \end{beamercolorbox}
   \end{columns}
   %\begin{beamercolorbox}[wd=\paperwidth]{lower separation line head}

src/org-mode-poster_poster.org

@@ -65,7 +65,7 @@
   (setq org-latex-listings 'minted)
   '(org-export-latex-listings-langs (quote ((emacs-lisp "Lisp") (lisp "Lisp") (clojure "Lisp") (c "C") (cc "C++") (fortran "fortran") (perl "Perl") (cperl "Perl") (python "Python") (ruby "Ruby") (html "HTML") (xml "XML") (tex "TeX") (latex "TeX") (shell-script "bash") (gnuplot "Gnuplot") (ocaml "Caml") (caml "Caml") (sql "SQL") (sqlite "sql") (R-mode "R"))))
   (setq org-latex-minted-options
-     '(("linenos=true")))
+     '(("linenos=true") ("bgcolor=lightgray")))
   ; set timestamp format
   ;(setq org-export-date-timestamp-format "%FT%T%z")
   (require 'org-wc)
@@ -161,7 +161,7 @@
 
 **** Block
 :PROPERTIES:
-:BEAMER_col: 0.48
+:BEAMER_col: 0.68
 :BEAMER_opt: [T]
 :END:
 
@@ -192,7 +192,7 @@ hist(x2, col="blue", add=TRUE)
 
 **** Block
 :PROPERTIES:
-:BEAMER_col: 0.88
+:BEAMER_col: 0.78
 :BEAMER_opt: [T]
 :END:
 
@@ -302,7 +302,7 @@ derived as follows:
 :END:
 
 #+NAME: codeleft
-#+BEGIN_SRC R :file 4l.png :session org_org :exports results :results graphics
+#+BEGIN_SRC R :file 4l.png :session :exports results :results graphics
 d1 <- density(x1)
 plot(d1, col="red", lwd=3)
 #+END_SRC
@@ -322,7 +322,7 @@ plot(d1, col="red", lwd=3)
 :END:
 
 #+NAME: coderight
-#+BEGIN_SRC R  :file 4r.png :session org_org :exports results :results graphics
+#+BEGIN_SRC R  :file 4r.png :session :exports results :results graphics
 d2 <- density(x2)
 plot(d2, col="blue", lwd=3)
 #+END_SRC

src/org-mode-poster_poster.tex

@@ -1,4 +1,4 @@
-% Created 2018-04-02 Mon 19:58
+% Created 2018-04-02 Mon 22:17
 % Intended LaTeX compiler: pdflatex
 \documentclass[final]{beamer}
 	         \usetheme{ph}
@@ -33,11 +33,11 @@ Philipp Homan$^{1}$,
 \normalsize{Hempstead, NY}
 }
 \usetheme{default}
-\date{2018-04-02 19:58}
+\date{2018-04-02 22:17}
 \title{Using org-mode to produce scientific posters}
 \begin{document}
 
-\begin{frame}[fragile,label={sec:org10a116a}]{}
+\begin{frame}[fragile,label={sec:orgec21ff0}]{}
  \begin{columns}
 \begin{column}[t]{0.45\columnwidth}
 \begin{block}{Background}
@@ -51,12 +51,12 @@ org-mode syntax
 code, graphs and numbers from inline code in languages such as R,
 python, Matlab and even shell scripting
 \item Inline code would look like this, which will produce a graph
-(Fig. \ref{fig:org8cce396}):
+(Fig. \ref{fig:org498cf2b}):
 \end{itemize}
 
 \begin{columns}
-\begin{column}[T]{0.48\columnwidth}
+\begin{column}[T]{0.68\columnwidth}
-\begin{minted}[linenos=true]{r}
+\begin{minted}[linenos=true,bgcolor=lightgray]{r}
 set.seed(20180402)
 x1 <- rnorm(100, 0, 1)
 x2 <- rnorm(100, 0.5, 1)
@@ -67,7 +67,7 @@ hist(x2, col="blue", add=TRUE)
 \begin{figure}[htbp]
 \centering
 \includegraphics[width=.9\linewidth]{3.png}
-\caption{\label{fig:org8cce396}
+\caption{\label{fig:org498cf2b}
 This is the output.}
 \end{figure}
 \end{column}
@@ -81,12 +81,12 @@ This is the output.}
 capabilities
 \item Some code to process the first vector from above to make a table out
 of its summary could look like this, which would result in a little
-table (Table \ref{tab:orgfdd29a9}) :
+table (Table \ref{tab:org80b4f16}) :
 \end{itemize}
 
 \begin{columns}
-\begin{column}[T]{0.88\columnwidth}
+\begin{column}[T]{0.78\columnwidth}
-\begin{minted}[linenos=true]{r}
+\begin{minted}[linenos=true,bgcolor=lightgray]{r}
 library(broom)
 library(dplyr)
 t1 <- tidy(round(summary(x1), 2)) 
@@ -109,7 +109,7 @@ minimum & q1 & median & mean & q3 & maximum & name\\
 -2.17 & -0.45 & 0.07 & 0.13 & 0.85 & 2.23 & x2\\
 \hline
 \end{tabular}
-\caption{\label{tab:orgfdd29a9}
+\caption{\label{tab:org80b4f16}
 A table summarizing the two distributions.}
 
 \end{table}
@@ -122,13 +122,13 @@ A table summarizing the two distributions.}
 \begin{block}{Graphics}
 \begin{itemize}
 \item We can use shell scripting to grab an image with curl from the
-internet (Fig. \ref{fig:orga373a15}):
+internet (Fig. \ref{fig:orge0395cc}):
 \end{itemize}
 
 \begin{columns}
 \begin{column}[T]{0.78\columnwidth}
 \footnotesize
-\begin{minted}[linenos=true]{bash}
+\begin{minted}[linenos=true,bgcolor=lightgray]{bash}
 # Download emacs icon from gnu.org
 curl -0 https://www.gnu.org/software/emacs/images/emacs.png
 \end{minted}
@@ -139,7 +139,7 @@ curl -0 https://www.gnu.org/software/emacs/images/emacs.png
 \begin{figure}[htbp]
 \centering
 \includegraphics[page=9,width=0.2\textwidth]{emacs.png}
-\caption{\label{fig:orga373a15}
+\caption{\label{fig:orge0395cc}
 This is the downloaded image.}
 \end{figure}
 \end{column}
@@ -185,7 +185,7 @@ derived as follows:
 \begin{figure}[htbp]
 \centering
 \includegraphics[width=.9\linewidth]{4l.png}
-\caption{\label{fig:orgf47550b}
+\caption{\label{fig:org9158640}
 This is the left figure of a two-column block, showing the density of \(x1\).}
 \end{figure}
 \end{column}
@@ -195,7 +195,7 @@ This is the left figure of a two-column block, showing the density of \(x1\).}
 \begin{figure}[htbp]
 \centering
 \includegraphics[width=.9\linewidth]{4r.png}
-\caption{\label{fig:org96112b0}
+\caption{\label{fig:org4bc9c2a}
 This is the right figure. It shows the density of \(x2\).}
 \end{figure}
 \end{column}

src/org-mode-poster_poster.tex~

@@ -1,4 +1,4 @@
-% Created 2018-04-02 Mon 19:58
+% Created 2018-04-02 Mon 22:15
 % Intended LaTeX compiler: pdflatex
 \documentclass[final]{beamer}
 	         \usetheme{ph}
@@ -33,11 +33,11 @@ Philipp Homan$^{1}$,
 \normalsize{Hempstead, NY}
 }
 \usetheme{default}
-\date{2018-04-02 19:58}
+\date{2018-04-02 22:15}
 \title{Using org-mode to produce scientific posters}
 \begin{document}
 
-\begin{frame}[fragile,label={sec:org5deb971}]{}
+\begin{frame}[fragile,label={sec:org1571d9a}]{}
  \begin{columns}
 \begin{column}[t]{0.45\columnwidth}
 \begin{block}{Background}
@@ -51,13 +51,13 @@ org-mode syntax
 code, graphs and numbers from inline code in languages such as R,
 python, Matlab and even shell scripting
 \item Inline code would look like this, which will produce a graph
-(Fig. \ref{fig:org71455a2}):
+(Fig. \ref{fig:org6629f8c}):
 \end{itemize}
 
 \begin{columns}
-\begin{column}[T]{0.48\columnwidth}
+\begin{column}[T]{0.68\columnwidth}
-\begin{minted}[linenos=true]{r}
+\begin{minted}[linenos=true,bgcolor=lightgray]{r}
-set.seet(20180402)
+set.seed(20180402)
 x1 <- rnorm(100, 0, 1)
 x2 <- rnorm(100, 0.5, 1)
 hist(x1, col="red")
@@ -67,7 +67,7 @@ hist(x2, col="blue", add=TRUE)
 \begin{figure}[htbp]
 \centering
 \includegraphics[width=.9\linewidth]{3.png}
-\caption{\label{fig:org71455a2}
+\caption{\label{fig:org6629f8c}
 This is the output.}
 \end{figure}
 \end{column}
@@ -81,12 +81,12 @@ This is the output.}
 capabilities
 \item Some code to process the first vector from above to make a table out
 of its summary could look like this, which would result in a little
-table (Table \ref{tab:orgf4d0fa2}) :
+table (Table \ref{tab:org74ecade}) :
 \end{itemize}
 
 \begin{columns}
-\begin{column}[T]{0.88\columnwidth}
+\begin{column}[T]{0.78\columnwidth}
-\begin{minted}[linenos=true]{r}
+\begin{minted}[linenos=true,bgcolor=lightgray]{r}
 library(broom)
 library(dplyr)
 t1 <- tidy(round(summary(x1), 2)) 
@@ -109,7 +109,7 @@ minimum & q1 & median & mean & q3 & maximum & name\\
 -2.17 & -0.45 & 0.07 & 0.13 & 0.85 & 2.23 & x2\\
 \hline
 \end{tabular}
-\caption{\label{tab:orgf4d0fa2}
+\caption{\label{tab:org74ecade}
 A table summarizing the two distributions.}
 
 \end{table}
@@ -122,13 +122,13 @@ A table summarizing the two distributions.}
 \begin{block}{Graphics}
 \begin{itemize}
 \item We can use shell scripting to grab an image with curl from the
-internet (Fig. \ref{fig:org5863a78}):
+internet (Fig. \ref{fig:org966972d}):
 \end{itemize}
 
 \begin{columns}
 \begin{column}[T]{0.78\columnwidth}
 \footnotesize
-\begin{minted}[linenos=true]{bash}
+\begin{minted}[linenos=true,bgcolor=lightgray]{bash}
 # Download emacs icon from gnu.org
 curl -0 https://www.gnu.org/software/emacs/images/emacs.png
 \end{minted}
@@ -139,7 +139,7 @@ curl -0 https://www.gnu.org/software/emacs/images/emacs.png
 \begin{figure}[htbp]
 \centering
 \includegraphics[page=9,width=0.2\textwidth]{emacs.png}
-\caption{\label{fig:org5863a78}
+\caption{\label{fig:org966972d}
 This is the downloaded image.}
 \end{figure}
 \end{column}
@@ -185,7 +185,7 @@ derived as follows:
 \begin{figure}[htbp]
 \centering
 \includegraphics[width=.9\linewidth]{4l.png}
-\caption{\label{fig:orga83a496}
+\caption{\label{fig:orga3a0e13}
 This is the left figure of a two-column block, showing the density of \(x1\).}
 \end{figure}
 \end{column}
@@ -195,7 +195,7 @@ This is the left figure of a two-column block, showing the density of \(x1\).}
 \begin{figure}[htbp]
 \centering
 \includegraphics[width=.9\linewidth]{4r.png}
-\caption{\label{fig:org63d9981}
+\caption{\label{fig:org6c7191a}
 This is the right figure. It shows the density of \(x2\).}
 \end{figure}
 \end{column}