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Makefile
1
Makefile
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@ -84,6 +84,7 @@ git: all
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git add src/org-mode-poster_poster.tex
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git add src/org-mode-poster_poster.pdf
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git add src/org-mode-poster_poster.png
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git add src/*.sty
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git add README.org
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git add README.md
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git add ext/*
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@ -171,6 +171,7 @@
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\begin{beamercolorbox}[leftskip=-0.5cm,wd=\columnwidth, ht=4cm]{logo}
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\includegraphics[width=0.9\textwidth,right]{logo_feinstein.pdf}
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%\vskip1.6ex
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\vspace{0.3ex}
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\end{beamercolorbox}
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\column{.65\textwidth}
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\begin{beamercolorbox}[leftskip=1cm,wd=\columnwidth, ht=4cm]{headline}
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@ -194,9 +195,9 @@
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\textbf{\auth} & & & & & \\
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\authemail & &
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\includegraphics[width=0.5in]{twitter.pdf} & \authtwitter &
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\includegraphics[width=0.5in]{github.pdf} & \authgithub \\
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\includegraphics[width=0.5in]{github.pdf} & \authgithub
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\end{tabular}
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\vspace{-0.2ex}
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\vspace{0.3ex}
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\end{beamercolorbox}
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\end{columns}
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@ -1,4 +1,4 @@
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% Created 2018-05-01 Tue 00:19
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% Created 2018-05-01 Tue 16:28
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% Intended LaTeX compiler: pdflatex
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\documentclass[final]{beamer}
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\usetheme{ph}
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@ -37,42 +37,42 @@ Philipp Homan$^{1}$
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\normalsize{Hempstead, NY}
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}
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\usetheme{default}
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\date{2018-05-01 00:19}
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\date{2018-05-01 16:28}
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\title{Using org-mode for scientific posters}
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\begin{document}
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\begin{frame}[fragile,label={sec:orgf72e699}]{}
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\begin{frame}[fragile,label={sec:org88bd8a7}]{}
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\begin{columns}
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\begin{column}[t]{0.45\columnwidth}
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\begin{block}{Background}
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\begin{itemize}
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\item Here we show how org-mode (version
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9.1.7) and emacs (version
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25.2.2) can be used to make decent looking scientific
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9.1.9) and emacs (version
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25.1.1) can be used to make decent looking scientific
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posters
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\item With org-mode we can populate the poster with code, graphs and numbers
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from inline code in languages such as R, python, Matlab and even shell
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scripting
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\item For example, this poster was created on 2018-05-01 00:19 on
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Ubuntu 17.10.
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\item For example, this poster was created on 2018-05-01 16:28 on
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Ubuntu 17.04.
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\item Inline code could look like this (which will produce a graph;
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Fig. \ref{fig:org2e838e7}):
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Fig. \ref{fig:orge07790b}):
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\end{itemize}
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\begin{columns}
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\begin{column}[T]{0.68\columnwidth}
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\begin{minted}[linenos=true,bgcolor=lightgray]{r}
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\begin{verbatim}
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set.seed(20180402)
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x1 <- rnorm(100, 0, 1)
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x2 <- rnorm(100, 0.5, 1)
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hist(x1, col="red")
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hist(x2, col="blue", add=TRUE)
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\end{minted}
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\end{verbatim}
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\begin{figure}[htbp]
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\centering
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\includegraphics[width=.9\linewidth]{3.png}
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\caption{\label{fig:org2e838e7}
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\caption{\label{fig:orge07790b}
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This is the output.}
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\end{figure}
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\end{column}
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@ -85,12 +85,12 @@ This is the output.}
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capabilities
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\item Some code to process the first vector from above to make a table out
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of its summary could look like this, which would result in a little
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table (Table \ref{tab:org6fc9eaf}) :
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table (Table \ref{tab:org7ca0bf7}) :
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\end{itemize}
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\begin{columns}
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\begin{column}[T]{0.78\columnwidth}
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\begin{minted}[linenos=true,bgcolor=lightgray]{r}
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\begin{verbatim}
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library(broom)
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library(dplyr)
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t1 <- tidy(round(summary(x1), 2))
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@ -99,7 +99,7 @@ t2 <- tidy(round(summary(x2), 2))
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# This will export as a table
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rbind(t1, t2) %>%
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mutate(name=c("x1", "x2"))
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\end{minted}
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\end{verbatim}
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\vspace{2cm}
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\small
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@ -113,7 +113,7 @@ minimum & q1 & median & mean & q3 & maximum & name\\
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-2.17 & -0.45 & 0.07 & 0.13 & 0.85 & 2.23 & x2\\
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\hline
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\end{tabular}
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\caption{\label{tab:org6fc9eaf}
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\caption{\label{tab:org7ca0bf7}
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A table summarizing the two distributions.}
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\end{table}
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@ -126,16 +126,16 @@ A table summarizing the two distributions.}
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\begin{block}{Graphics}
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\begin{itemize}
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\item We can use shell scripting to grab an image with curl from the
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internet (Fig. \ref{fig:orgcf4e1c0}):
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internet (Fig. \ref{fig:orge518712}):
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\end{itemize}
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\begin{columns}
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\begin{column}[T]{0.78\columnwidth}
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\footnotesize
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\begin{minted}[linenos=true,bgcolor=lightgray]{bash}
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\begin{verbatim}
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# Download emacs icon from gnu.org
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curl -0 https://www.gnu.org/software/emacs/images/emacs.png
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\end{minted}
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\end{verbatim}
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\normalsize
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\vspace{2cm}
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@ -143,7 +143,7 @@ curl -0 https://www.gnu.org/software/emacs/images/emacs.png
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\begin{figure}[htbp]
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\centering
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\includegraphics[page=9,width=0.2\textwidth]{emacs.png}
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\caption{\label{fig:orgcf4e1c0}
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\caption{\label{fig:orge518712}
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This is the downloaded image.}
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\end{figure}
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\end{column}
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@ -187,7 +187,7 @@ derived as follows:
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\begin{figure}[htbp]
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\centering
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\includegraphics[width=.9\linewidth]{4l.png}
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\caption{\label{fig:org60e8eb6}
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\caption{\label{fig:orgf59c614}
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This is the left figure of a two-column block, showing the density of \(x1\).}
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\end{figure}
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\end{column}
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@ -197,7 +197,7 @@ This is the left figure of a two-column block, showing the density of \(x1\).}
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\begin{figure}[htbp]
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\centering
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\includegraphics[width=.9\linewidth]{4r.png}
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\caption{\label{fig:org80c9647}
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\caption{\label{fig:org5b61d7c}
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This is the right figure. It shows the density of \(x2\).}
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\end{figure}
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\end{column}
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