diff --git a/src/org-mode-poster_poster.org b/src/org-mode-poster_poster.org index d50a857..058c7ed 100644 --- a/src/org-mode-poster_poster.org +++ b/src/org-mode-poster_poster.org @@ -55,6 +55,7 @@ #+LATEX_HEADER: \author{ #+LATEX_HEADER: Philipp Homan$^{1}$ #+LATEX_HEADER: \\ +#+LATEX_HEADER: \vspace{5mm} #+LATEX_HEADER: \normalsize{$^{1}$Department of Psychiatry,} #+LATEX_HEADER: \normalsize{The Donald and Barbara Zucker} #+LATEX_HEADER: \normalsize{School of Medicine at Northwell/Hofstra,} diff --git a/src/org-mode-poster_poster.pdf b/src/org-mode-poster_poster.pdf index 7260337..57ed9c3 100644 Binary files a/src/org-mode-poster_poster.pdf and b/src/org-mode-poster_poster.pdf differ diff --git a/src/org-mode-poster_poster.png b/src/org-mode-poster_poster.png index f4c07de..73994c0 100644 Binary files a/src/org-mode-poster_poster.png and b/src/org-mode-poster_poster.png differ diff --git a/src/org-mode-poster_poster.tex b/src/org-mode-poster_poster.tex index 7c360b6..0ae619e 100644 --- a/src/org-mode-poster_poster.tex +++ b/src/org-mode-poster_poster.tex @@ -1,4 +1,4 @@ -% Created 2018-05-01 Tue 16:28 +% Created 2018-05-01 Tue 16:31 % Intended LaTeX compiler: pdflatex \documentclass[final]{beamer} \usetheme{ph} @@ -31,17 +31,18 @@ \author{ Philipp Homan$^{1}$ \\ +\vspace{5mm} \normalsize{$^{1}$Department of Psychiatry,} \normalsize{The Donald and Barbara Zucker} \normalsize{School of Medicine at Northwell/Hofstra,} \normalsize{Hempstead, NY} } \usetheme{default} -\date{2018-05-01 16:28} +\date{2018-05-01 16:31} \title{Using org-mode for scientific posters} \begin{document} -\begin{frame}[fragile,label={sec:org88bd8a7}]{} +\begin{frame}[fragile,label={sec:org48aedac}]{} \begin{columns} \begin{column}[t]{0.45\columnwidth} \begin{block}{Background} @@ -53,26 +54,26 @@ posters \item With org-mode we can populate the poster with code, graphs and numbers from inline code in languages such as R, python, Matlab and even shell scripting -\item For example, this poster was created on 2018-05-01 16:28 on +\item For example, this poster was created on 2018-05-01 16:31 on Ubuntu 17.04. \item Inline code could look like this (which will produce a graph; -Fig. \ref{fig:orge07790b}): +Fig. \ref{fig:orgf02b88f}): \end{itemize} \begin{columns} \begin{column}[T]{0.68\columnwidth} -\begin{verbatim} +\begin{minted}[linenos=true,bgcolor=lightgray]{r} set.seed(20180402) x1 <- rnorm(100, 0, 1) x2 <- rnorm(100, 0.5, 1) hist(x1, col="red") hist(x2, col="blue", add=TRUE) -\end{verbatim} +\end{minted} \begin{figure}[htbp] \centering \includegraphics[width=.9\linewidth]{3.png} -\caption{\label{fig:orge07790b} +\caption{\label{fig:orgf02b88f} This is the output.} \end{figure} \end{column} @@ -85,12 +86,12 @@ This is the output.} capabilities \item Some code to process the first vector from above to make a table out of its summary could look like this, which would result in a little -table (Table \ref{tab:org7ca0bf7}) : +table (Table \ref{tab:orga274aaf}) : \end{itemize} \begin{columns} \begin{column}[T]{0.78\columnwidth} -\begin{verbatim} +\begin{minted}[linenos=true,bgcolor=lightgray]{r} library(broom) library(dplyr) t1 <- tidy(round(summary(x1), 2)) @@ -99,11 +100,13 @@ t2 <- tidy(round(summary(x2), 2)) # This will export as a table rbind(t1, t2) %>% mutate(name=c("x1", "x2")) -\end{verbatim} +\end{minted} \vspace{2cm} \small \begin{table}[htbp] +\caption{\label{tab:orga274aaf} +A table summarizing the two distributions.} \centering \begin{tabular}{rrrrrrl} \hline @@ -113,9 +116,6 @@ minimum & q1 & median & mean & q3 & maximum & name\\ -2.17 & -0.45 & 0.07 & 0.13 & 0.85 & 2.23 & x2\\ \hline \end{tabular} -\caption{\label{tab:org7ca0bf7} -A table summarizing the two distributions.} - \end{table} \end{column} \end{columns} @@ -126,16 +126,16 @@ A table summarizing the two distributions.} \begin{block}{Graphics} \begin{itemize} \item We can use shell scripting to grab an image with curl from the -internet (Fig. \ref{fig:orge518712}): +internet (Fig. \ref{fig:orgcbcb8d7}): \end{itemize} \begin{columns} \begin{column}[T]{0.78\columnwidth} \footnotesize -\begin{verbatim} +\begin{minted}[linenos=true,bgcolor=lightgray]{bash} # Download emacs icon from gnu.org curl -0 https://www.gnu.org/software/emacs/images/emacs.png -\end{verbatim} +\end{minted} \normalsize \vspace{2cm} @@ -143,7 +143,7 @@ curl -0 https://www.gnu.org/software/emacs/images/emacs.png \begin{figure}[htbp] \centering \includegraphics[page=9,width=0.2\textwidth]{emacs.png} -\caption{\label{fig:orge518712} +\caption{\label{fig:orgcbcb8d7} This is the downloaded image.} \end{figure} \end{column} @@ -187,7 +187,7 @@ derived as follows: \begin{figure}[htbp] \centering \includegraphics[width=.9\linewidth]{4l.png} -\caption{\label{fig:orgf59c614} +\caption{\label{fig:orgf1fb0dc} This is the left figure of a two-column block, showing the density of \(x1\).} \end{figure} \end{column} @@ -197,7 +197,7 @@ This is the left figure of a two-column block, showing the density of \(x1\).} \begin{figure}[htbp] \centering \includegraphics[width=.9\linewidth]{4r.png} -\caption{\label{fig:org5b61d7c} +\caption{\label{fig:orgf00fe3b} This is the right figure. It shows the density of \(x2\).} \end{figure} \end{column}